WormBase Tree Display for Variation: WBVar00249297

WBVar00249297 Name: Public_name: tm243
    Other_name: B0464.5a.2:c.1817_1954-283del
      B0464.5d.1:c.665_802-283del
      B0464.5c.1:c.953_1266+89del
      B0464.5b.1:c.953_1090-283del
      B0464.5a.1:c.1817_1954-283del
    HGVSg: CHROMOSOME_III:g.9460087_9460783del
  Sequence_details: SMap: S_parent: Sequence: B0464
    Flanking_sequences: cggatcatttggtgaaaatggctcaggaga cttatttccactctgcaaccaaaattaccg
    Mapping_target: B0464
    Source_location: 7 CHROMOSOME_III 9460086 9460784 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm243_external
      tm243_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 243
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004980
    Transcript: B0464.5b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0464.5b.1:c.953_1090-283del
        cDNA_position: 981-?
        CDS_position: 953-?
        Protein_position: 318-?
        Intron_number: 7/12
        Exon_number: 7/13
      B0464.5a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0464.5a.1:c.1817_1954-283del
        cDNA_position: 2273-?
        CDS_position: 1817-?
        Protein_position: 606-?
        Intron_number: 6/10
        Exon_number: 6/11
      B0464.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0464.5c.1:c.953_1266+89del
        cDNA_position: 987-?
        CDS_position: 953-?
        Protein_position: 318-?
        Intron_number: 7-8/12
        Exon_number: 7-8/13
      B0464.5a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0464.5a.2:c.1817_1954-283del
        cDNA_position: 1817-?
        CDS_position: 1817-?
        Protein_position: 606-?
        Intron_number: 5/10
        Exon_number: 5/11
      B0464.5d.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0464.5d.1:c.665_802-283del
        cDNA_position: 665-?
        CDS_position: 665-?
        Protein_position: 222-?
        Intron_number: 4/7
        Exon_number: 4/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as sterile by the National Bioresource Project of Japan. Mutation is balanced with eT1. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 3746/3747-4443/4444 (697 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele