WormBase Tree Display for Variation: WBVar00249311

WBVar00249311 Name: Public_name: tm259
    Other_name: ZK1193.5c.2:c.373-110_699+7del
      ZK1193.5a.1:c.997-110_1323+7del
      ZK1193.5d.3:c.373-110_690+7del
      ZK1193.5c.1:c.373-110_699+7del
      ZK1193.5e.1:c.997-110_1314+7del
      ZK1193.5d.4:c.373-110_690+7del
      ZK1193.5d.1:c.373-110_690+7del
      ZK1193.5d.2:c.373-110_690+7del
      ZK1193.5d.5:c.373-110_690+7del
    HGVSg: CHROMOSOME_X:g.427814_428797del
  Sequence_details: SMap: S_parent: Sequence: ZK1193
    Flanking_sequences: tcgataactagtaatcagtattaatataga attcagattttcggccgtagtgttaggtct
    Mapping_target: ZK1193
    Source_location: 7 CHROMOSOME_X 427813 428798 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm259_external
      tm259_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 259
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00022861
    Transcript: ZK1193.5c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5c.2:c.373-110_699+7del
        Intron_number: 5-7/8
        Exon_number: 6-7/9
      ZK1193.5e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5e.1:c.997-110_1314+7del
        Intron_number: 6-8/8
        Exon_number: 7-8/9
      ZK1193.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5c.1:c.373-110_699+7del
        Intron_number: 6-8/9
        Exon_number: 7-8/10
      ZK1193.5d.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5d.4:c.373-110_690+7del
        Intron_number: 5-7/8
        Exon_number: 6-7/9
      ZK1193.5d.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5d.3:c.373-110_690+7del
        Intron_number: 6-8/9
        Exon_number: 7-8/10
      ZK1193.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5d.1:c.373-110_690+7del
        Intron_number: 7-9/10
        Exon_number: 8-9/11
      ZK1193.5d.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5d.2:c.373-110_690+7del
        Intron_number: 7-9/10
        Exon_number: 8-9/11
      ZK1193.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5a.1:c.997-110_1323+7del
        Intron_number: 7-9/10
        Exon_number: 8-9/11
      ZK1193.5d.5 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1193.5d.5:c.373-110_690+7del
        Intron_number: 4-6/7
        Exon_number: 5-6/8
    Interactor: WBInteraction000520533
      WBInteraction000536221
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description (2)
  Reference: WBPaper00031084
  Remark: 21397/21398-22381/22382 (984 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele