WormBase Tree Display for Variation: WBVar00249312

WBVar00249312 Name: Public_name: tm260
    HGVSg: CHROMOSOME_X:g.9846641_9847563del
  Sequence_details: SMap: S_parent: Sequence: R07B1
    Flanking_sequences: tgttggctcgaattccaacaattccaacaa gtaagctccgacagttcacctgaatcctgt
    Mapping_target: R07B1
    Source_location: 7 CHROMOSOME_X 9846640 9847564 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm260_external
      tm260_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 260
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006881
      WBGene00197783
    Transcript: R07B1.20 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      R07B1.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-241
        CDS_position: ?-225
        Protein_position: ?-75
        Intron_number: 2/5
        Exon_number: 1-3/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000469 Paper_evidence: WBPaper00051514
        Curator_confirmed: WBPerson3648
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000816 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. O. Hobert: affects development of postdeirid neurons. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: OH
        EQ_annotations: Anatomy_term: WBbt:0005471 PATO:0000460 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson712
      WBPhenotype:0001510 Paper_evidence: WBPaper00051514
        Curator_confirmed: WBPerson3648
  Reference: WBPaper00051514
  Remark: 5842/5843-6765/6766 (923 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele