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WormBase Tree Display for Variation: WBVar00249353

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Name Class

WBVar00249353NamePublic_nametm305
Other_nameF01G4.1.1:c.1890_2677del
CE05553:p.Ala631ProfsTer8
HGVSgCHROMOSOME_IV:g.11128152_11128939del
Sequence_detailsSMapS_parentSequenceF01G4
Flanking_sequencestcgtcgtgttgaaggacaaatcagaaaaggacctccgtttagacggttcaactaaaccag
Mapping_targetF01G4
Source_location7CHROMOSOME_IV1112815111128940Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm305_external
tm305_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00031323
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq305
NBP_allele
StatusLive
AffectsGeneWBGene00004204
TranscriptF01G4.1.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF01G4.1.1:c.1890_2677del
HGVSpCE05553:p.Ala631ProfsTer8
cDNA_position1940-2727
CDS_position1890-2677
Protein_position630-893
Exon_number6/10
Codon_changeggAGCGTTCAACGTTTTGATGACAACATATGAATATGTGATCAAAGAGAAAGCACTGCTTGGTAAAATCCGTTGGAAGTATATGATAATCGACGAAGGACATCGTTTGAAGAATCACAATTGTAAATTGACATTGATGTTGAACGGATTCTTCCATGCTCAGCATCGTTTACTTCTTACTGGTACTCCACTTCAGAACAAACTTCCTGAGCTATGGGCTCTGCTGAACTTCTTACTTCCATCGATCTTCTCATCTTGTGGAACTTTCGAACAATGGTTCAATGCTCCATTTGCGACTACAGGAGAGAAAGTAGAACTGAATCAAGAAGAGACGATGCTCATCATCAGAAGACTGCACAAGGTTCTTCGTCCATTCTTGCTGAGACGTCTCAAAAAGGAAGTAGAATCACAGCTTCCTGACAAGACCGAGTATGTCATCAAGTGTGACCAGTCTGCTTTGCAAAAGGTTATTTATCGTCATATGCAGAAAGGATTGCTTCTCGACGCTAAAATGTCATCTGGAGCACGTTCGTTGATGAACACTGTCGTGCATCTTCGCAAGCTTTGCAATCACCCGTTCCTTTTCCCTAATATTGAAGATTCCTGCCGTGCATACTGGAAGGTCAACGAAGTCAATGGAACCGATCTAATGCGTGTTGCTGGAAAGTTGGAACTTCTCGATCGTATTCTACCGAAACTAAAGGCAACAGGTCATCGAATTCTGATGTTCTTCCAGATGACGTCTATGATGAACATTTTCGAAGACTTTTTGAATTTCCGAAGATACACGTac/ggac
Amino_acid_changeGAFNVLMTTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSLMNTVVHLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTY/GX
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as possible lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as possible lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark356/357-1144/1145 (788 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele