WormBase Tree Display for Variation: WBVar00249494

WBVar00249494 Name: Public_name: tm448
    Other_name: W06B3.2d.1:c.335-78_490delinsC
      W06B3.2a.1:c.482-78_637delinsC
      W06B3.2b.1:c.482-78_637delinsC
      W06B3.2c.1:c.551-78_706delinsC
      W06B3.2e.1:c.551-78_706delinsC
      W06B3.2a.2:c.482-78_637delinsC
      W06B3.2f.1:c.335-78_490delinsC
    HGVSg: CHROMOSOME_X:g.11999375_12000158delinsG
  Sequence_details: SMap: S_parent: Sequence: W06B3
    Flanking_sequences: gaagagttccatcttggttaacaagcaagt tgtatagtgggtataatacacccaacacaa
    Mapping_target: W06B3
    Source_location: 7 CHROMOSOME_X 11999374 12000159 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: G
      Deletion
    PCR_product: tm448_external
      tm448_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 448
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004859
    Transcript: W06B3.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2b.1:c.482-78_637delinsC
        cDNA_position: ?-681
        CDS_position: ?-637
        Protein_position: ?-213
        Intron_number: 4-5/9
        Exon_number: 5-6/10
      W06B3.2f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2f.1:c.335-78_490delinsC
        cDNA_position: ?-495
        CDS_position: ?-490
        Protein_position: ?-164
        Intron_number: 3-4/8
        Exon_number: 4-5/9
      W06B3.2e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2e.1:c.551-78_706delinsC
        cDNA_position: ?-706
        CDS_position: ?-706
        Protein_position: ?-236
        Intron_number: 4-5/9
        Exon_number: 5-6/10
      W06B3.2d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2d.1:c.335-78_490delinsC
        cDNA_position: ?-495
        CDS_position: ?-490
        Protein_position: ?-164
        Intron_number: 3-4/9
        Exon_number: 4-5/10
      W06B3.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2c.1:c.551-78_706delinsC
        cDNA_position: ?-706
        CDS_position: ?-706
        Protein_position: ?-236
        Intron_number: 4-5/8
        Exon_number: 5-6/9
      W06B3.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2a.1:c.482-78_637delinsC
        cDNA_position: ?-679
        CDS_position: ?-637
        Protein_position: ?-213
        Intron_number: 4-5/10
        Exon_number: 5-6/11
      W06B3.2a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W06B3.2a.2:c.482-78_637delinsC
        cDNA_position: ?-1251
        CDS_position: ?-637
        Protein_position: ?-213
        Intron_number: 5-6/11
        Exon_number: 6-7/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. Y. Ohshima: Development, 132, 3175 (2005). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 934/935-G-1718/1719 (784 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele