WormBase Tree Display for Variation: WBVar00249531

WBVar00249531 Name: Public_name: tm488
    Other_name: C33B4.3a.1:c.331-86_1608del
      C33B4.3c.1:c.331-86_1608del
      C33B4.3b.1:c.331-86_1608del
    HGVSg: CHROMOSOME_II:g.11388638_11390174del
  Sequence_details: SMap: S_parent: Sequence: C33B4
    Flanking_sequences: acctgttggcggtcgatgcacaatagttcc tgcatctgatggaatatgacgcataaaaca
    Mapping_target: C33B4
    Source_location: 7 CHROMOSOME_II 11388637 11390175 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm488_external
      tm488_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 488
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006444
    Transcript: C33B4.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3b.1:c.331-86_1608del
        cDNA_position: ?-1789
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/11
        Exon_number: 4-7/12
      C33B4.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3c.1:c.331-86_1608del
        cDNA_position: ?-1688
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/13
        Exon_number: 4-7/14
      C33B4.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C33B4.3a.1:c.331-86_1608del
        cDNA_position: ?-1686
        CDS_position: ?-1608
        Protein_position: ?-536
        Intron_number: 3-6/12
        Exon_number: 4-7/13
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000306 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C. Rongo to the National Bioresource Project of Japan: normal GLR-1::GFP expression. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: OR
  Remark (2)
  Method: NBP_knockout_allele