WormBase Tree Display for Variation: WBVar00249555

WBVar00249555 Name: Public_name: tm514
    Other_name: B0336.1b.1:c.528+84_845del
      B0336.1a.1:c.690+84_1007del
    HGVSg: CHROMOSOME_III:g.5724307_5724729del
  Sequence_details: SMap: S_parent: Sequence: B0336
    Flanking_sequences: tcatccctaagtggatgcctacagcctaat aattgaatttgcaattggaaacctgagaag
    Mapping_target: B0336
    Source_location: 7 CHROMOSOME_III 5724306 5724730 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm514_external
      tm514_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00040426
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 514
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006943
    Transcript: B0336.1b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0336.1b.1:c.528+84_845del
        cDNA_position: ?-845
        CDS_position: ?-845
        Protein_position: ?-282
        Intron_number: 2/6
        Exon_number: 3/7
      B0336.1a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0336.1a.1:c.690+84_1007del
        cDNA_position: ?-1040
        CDS_position: ?-1007
        Protein_position: ?-336
        Intron_number: 5/10
        Exon_number: 6/11
    Interactor: WBInteraction000524874
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
  Remark: 37283/37284-37706/37707 (423 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele