WormBase Tree Display for Variation: WBVar00249651

WBVar00249651 Name: Public_name: tm616
    Other_name: F16B4.8c.1:c.385_730-104del
      F16B4.8a.1:c.706_1051-104del
      F16B4.8b.1:c.640_985-104del
    HGVSg: CHROMOSOME_V:g.1583780_1584438del
  Sequence_details: SMap: S_parent: Sequence: F16B4
    Flanking_sequences: atcaccgccgaaacattgagagacatcttt aatctttttaaactttaaaactaaaataat
    Mapping_target: F16B4
    Source_location: 7 CHROMOSOME_V 1583779 1584439 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm616_external
      tm616_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 616
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000387
    Transcript: F16B4.8b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F16B4.8b.1:c.640_985-104del
        cDNA_position: 640-?
        CDS_position: 640-?
        Protein_position: 214-?
        Intron_number: 3-4/5
        Exon_number: 3-4/6
      F16B4.8a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F16B4.8a.1:c.706_1051-104del
        cDNA_position: 753-?
        CDS_position: 706-?
        Protein_position: 236-?
        Intron_number: 5-6/7
        Exon_number: 5-6/8
      F16B4.8c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F16B4.8c.1:c.385_730-104del
        cDNA_position: 385-?
        CDS_position: 385-?
        Protein_position: 129-?
        Intron_number: 1-2/2
        Exon_number: 1-2/3
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
          Dr. J. Kaplan: Homozygotes are sterile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
  Remark: 6054/6055-6713/6714 (659 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele