WormBase Tree Display for Variation: WBVar00249666

WBVar00249666 Name: Public_name: tm633
    Other_name: ZK867.1b.3:c.-694+19_-48+112del
      ZK867.1b.1:c.-636+19_-48+112del
      ZK867.1b.4:c.-636+19_-48+112del
      ZK867.1d.1:c.316+19_904+112del
      ZK867.1e.1:c.265+19_853+112del
      ZK867.1f.1:c.316+19_904+112del
      ZK867.1c.1:c.265+19_853+112del
      ZK867.1b.2:c.-636+19_-48+112del
    HGVSg: CHROMOSOME_X:g.7221118_7221903del
  Sequence_details: SMap: S_parent: Sequence: ZK867
    Flanking_sequences: gtaggttaaaaggttagtttttgattagat aatcttatctttgaaactagaactgtcaaa
    Mapping_target: ZK867
    Source_location: 7 CHROMOSOME_X 7221117 7221904 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm633_external
      tm633_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 633
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00044068
    Transcript: ZK867.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1d.1:c.316+19_904+112del
        Intron_number: 3-5/8
        Exon_number: 4-5/9
      ZK867.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1b.1:c.-636+19_-48+112del
        Intron_number: 2-4/9
        Exon_number: 3-4/10
      ZK867.1b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1b.3:c.-694+19_-48+112del
        Intron_number: 3-4/9
        Exon_number: 4/10
      ZK867.1b.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1b.4:c.-636+19_-48+112del
        Intron_number: 2-4/9
        Exon_number: 3-4/10
      ZK867.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1f.1:c.316+19_904+112del
        Intron_number: 4-6/10
        Exon_number: 5-6/11
      ZK867.1b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1b.2:c.-636+19_-48+112del
        Intron_number: 3-5/10
        Exon_number: 4-5/11
      ZK867.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1c.1:c.265+19_853+112del
        Intron_number: 3-5/9
        Exon_number: 4-5/10
      ZK867.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK867.1e.1:c.265+19_853+112del
        Intron_number: 2-4/7
        Exon_number: 3-4/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Originally classified as 'homozygous viable' by the NBP. Comments to the National Bioresource Project of Japan: Dr. M. Zhen: sterile or lethal but deletion that is not associated with the syd-9 gene. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Originally classified as 'homozygous viable' by the NBP. Comments to the National Bioresource Project of Japan: Dr. M. Zhen: sterile or lethal but deletion that is not associated with the syd-9 gene. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000743 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. L. Timmons: negative for RNAi defects using various feeding strains to deliver dsRNA. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 15848/15849-16634/16635 (786 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele