WormBase Tree Display for Variation: WBVar00249692
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WBVar00249692 | Name | Public_name | tm660 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | Y57G11C.10a.1:c.112_652del | |||||||
CE14944:p.Tyr38LeufsTer43 | ||||||||
Y57G11C.10b.1:c.112_652del | ||||||||
CE39445:p.Tyr38LeufsTer43 | ||||||||
HGVSg | CHROMOSOME_IV:g.14792199_14792739del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y57G11C | ||||
Flanking_sequences | ggtacaagtatggtgactttccataacgag | gttgtttcggtcaatgtggagaaccttctt | ||||||
Mapping_target | Y57G11C | |||||||
Source_location | 7 | CHROMOSOME_IV | 14792198 | 14792740 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm660_external | |||||||
tm660_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 660 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00001558 | ||||||
Transcript | Y57G11C.10a.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | Y57G11C.10a.1:c.112_652del | |||||||
HGVSp | CE14944:p.Tyr38LeufsTer43 | |||||||
cDNA_position | 149-689 | |||||||
CDS_position | 112-652 | |||||||
Protein_position | 38-218 | |||||||
Exon_number | 2/5 | |||||||
Codon_change | TATTATGGAGGAGAGTCAGCTTCACTGACTCCACTTGAGCAACTCTACGAGAAATTCCACGGTCCACAAGCCAAGCCACAACAGGAGATGGGACGTGGACGTGACTGGAACGTCGACTTGATTCCAAAGTTTTTGATGGCCAACGGGCCATTGGTCAAGCTTCTCATCCATACTGGAGTCACTCGCTACTTGGAATTCAAGTCGATTGAGGCCTCGTTCGTTGTGAAGGGTGGAAAGATCTACAAGGTGCCGGCCGATGAGATGGAGGCTCTTGCCACTTCCCTTATGGGAATGTTCGAGAAACGTCGCTTCAAGAAGTTCCTCGTCTGGGTGCAACAATTCGATGAGAACAAGGAGGACACTTGGCAAGGACTTGACCCACACAACAGCACAATGCAGCAGGTTTACGAGAAGTTTGGCCTTGACGAGAACACCGCCGATTTCACCGGACACGCGCTGGCCCTCTACCGTGACGATGAGCACAAGAATCAACCATACGCTCCAGCTGTTGAGAAGATCCGATTGTACTCTGACTCATTGGct/ct | |||||||
Amino_acid_change | YYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLA/X | |||||||
Y57G11C.10b.1 | VEP_consequence | frameshift_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | Y57G11C.10b.1:c.112_652del | |||||||
HGVSp | CE39445:p.Tyr38LeufsTer43 | |||||||
cDNA_position | 112-652 | |||||||
CDS_position | 112-652 | |||||||
Protein_position | 38-218 | |||||||
Exon_number | 1/3 | |||||||
Codon_change | TATTATGGAGGAGAGTCAGCTTCACTGACTCCACTTGAGCAACTCTACGAGAAATTCCACGGTCCACAAGCCAAGCCACAACAGGAGATGGGACGTGGACGTGACTGGAACGTCGACTTGATTCCAAAGTTTTTGATGGCCAACGGGCCATTGGTCAAGCTTCTCATCCATACTGGAGTCACTCGCTACTTGGAATTCAAGTCGATTGAGGCCTCGTTCGTTGTGAAGGGTGGAAAGATCTACAAGGTGCCGGCCGATGAGATGGAGGCTCTTGCCACTTCCCTTATGGGAATGTTCGAGAAACGTCGCTTCAAGAAGTTCCTCGTCTGGGTGCAACAATTCGATGAGAACAAGGAGGACACTTGGCAAGGACTTGACCCACACAACAGCACAATGCAGCAGGTTTACGAGAAGTTTGGCCTTGACGAGAACACCGCCGATTTCACCGGACACGCGCTGGCCCTCTACCGTGACGATGAGCACAAGAATCAACCATACGCTCCAGCTGTTGAGAAGATCCGATTGTACTCTGACTCATTGGct/ct | |||||||
Amino_acid_change | YYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLA/X | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | IV | ||||||
Description | Phenotype | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. Comment from Dr. C. Rongo: Let, could not examine GLR-1 localization. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_not_observed | WBPhenotype:0000241 | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comment from Dr. Z. Zhou: no persistent cell corpses. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | 154930/154931-155471/155472 (541 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |