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WormBase Tree Display for Variation: WBVar00249692

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Name Class

WBVar00249692NamePublic_nametm660
Other_nameY57G11C.10a.1:c.112_652del
CE14944:p.Tyr38LeufsTer43
Y57G11C.10b.1:c.112_652del
CE39445:p.Tyr38LeufsTer43
HGVSgCHROMOSOME_IV:g.14792199_14792739del
Sequence_detailsSMapS_parentSequenceY57G11C
Flanking_sequencesggtacaagtatggtgactttccataacgaggttgtttcggtcaatgtggagaaccttctt
Mapping_targetY57G11C
Source_location7CHROMOSOME_IV1479219814792740Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm660_external
tm660_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq660
NBP_allele
StatusLive
AffectsGeneWBGene00001558
TranscriptY57G11C.10a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY57G11C.10a.1:c.112_652del
HGVSpCE14944:p.Tyr38LeufsTer43
cDNA_position149-689
CDS_position112-652
Protein_position38-218
Exon_number2/5
Codon_changeTATTATGGAGGAGAGTCAGCTTCACTGACTCCACTTGAGCAACTCTACGAGAAATTCCACGGTCCACAAGCCAAGCCACAACAGGAGATGGGACGTGGACGTGACTGGAACGTCGACTTGATTCCAAAGTTTTTGATGGCCAACGGGCCATTGGTCAAGCTTCTCATCCATACTGGAGTCACTCGCTACTTGGAATTCAAGTCGATTGAGGCCTCGTTCGTTGTGAAGGGTGGAAAGATCTACAAGGTGCCGGCCGATGAGATGGAGGCTCTTGCCACTTCCCTTATGGGAATGTTCGAGAAACGTCGCTTCAAGAAGTTCCTCGTCTGGGTGCAACAATTCGATGAGAACAAGGAGGACACTTGGCAAGGACTTGACCCACACAACAGCACAATGCAGCAGGTTTACGAGAAGTTTGGCCTTGACGAGAACACCGCCGATTTCACCGGACACGCGCTGGCCCTCTACCGTGACGATGAGCACAAGAATCAACCATACGCTCCAGCTGTTGAGAAGATCCGATTGTACTCTGACTCATTGGct/ct
Amino_acid_changeYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLA/X
Y57G11C.10b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY57G11C.10b.1:c.112_652del
HGVSpCE39445:p.Tyr38LeufsTer43
cDNA_position112-652
CDS_position112-652
Protein_position38-218
Exon_number1/3
Codon_changeTATTATGGAGGAGAGTCAGCTTCACTGACTCCACTTGAGCAACTCTACGAGAAATTCCACGGTCCACAAGCCAAGCCACAACAGGAGATGGGACGTGGACGTGACTGGAACGTCGACTTGATTCCAAAGTTTTTGATGGCCAACGGGCCATTGGTCAAGCTTCTCATCCATACTGGAGTCACTCGCTACTTGGAATTCAAGTCGATTGAGGCCTCGTTCGTTGTGAAGGGTGGAAAGATCTACAAGGTGCCGGCCGATGAGATGGAGGCTCTTGCCACTTCCCTTATGGGAATGTTCGAGAAACGTCGCTTCAAGAAGTTCCTCGTCTGGGTGCAACAATTCGATGAGAACAAGGAGGACACTTGGCAAGGACTTGACCCACACAACAGCACAATGCAGCAGGTTTACGAGAAGTTTGGCCTTGACGAGAACACCGCCGATTTCACCGGACACGCGCTGGCCCTCTACCGTGACGATGAGCACAAGAATCAACCATACGCTCCAGCTGTTGAGAAGATCCGATTGTACTCTGACTCATTGGct/ct
Amino_acid_changeYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLA/X
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan. Comment from Dr. C. Rongo: Let, could not examine GLR-1 localization.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000241Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment from Dr. Z. Zhou: no persistent cell corpses.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark154930/154931-155471/155472 (541 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele