WormBase Tree Display for Variation: WBVar00249700

WBVar00249700 Name: Public_name: tm668
    Other_name: H15N14.1e.1:c.211_690+13del
      H15N14.1d.1:c.211_690+13del
      H15N14.1c.1:c.211_897+13del
    HGVSg: CHROMOSOME_I:g.7774199_7775165del
  Sequence_details: SMap: S_parent: Sequence: H15N14
    Flanking_sequences: caacaacaggctcaacaacaagctcagaat tttcaaaagctgtacttataaattctcaag
    Mapping_target: H15N14
    Source_location: 7 CHROMOSOME_I 7774198 7775166 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm668_external
      tm668_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00000437
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 668
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000079
    Transcript: H15N14.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H15N14.1d.1:c.211_690+13del
        cDNA_position: 233-?
        CDS_position: 211-?
        Protein_position: 71-?
        Intron_number: 4-7/11
        Exon_number: 4-7/12
      H15N14.1f.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 211-?
        CDS_position: 211-?
        Protein_position: 71-?
        Exon_number: 3/3
      H15N14.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H15N14.1c.1:c.211_897+13del
        cDNA_position: 231-?
        CDS_position: 211-?
        Protein_position: 71-?
        Intron_number: 4-8/14
        Exon_number: 4-8/15
      H15N14.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H15N14.1e.1:c.211_690+13del
        cDNA_position: 231-?
        CDS_position: 211-?
        Protein_position: 71-?
        Intron_number: 4-7/13
        Exon_number: 4-7/14
      H15N14.1g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 211-?
        CDS_position: 211-?
        Protein_position: 71-?
        Intron_number: 3-4/4
        Exon_number: 3-5/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000007 Paper_evidence: WBPaper00056617
        Curator_confirmed: WBPerson11281
        Phenotype_assay: Genotype: unc-22(RNAi) Paper_evidence: WBPaper00056617
              Curator_confirmed: WBPerson11281
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. H. Sawa: Egl. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HS
      WBPhenotype:0000697 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. H. Sawa: Pvul. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HS
      WBPhenotype:0000699 Paper_evidence: WBPaper00056617
        Curator_confirmed: WBPerson11281
      WBPhenotype:0001171 Paper_evidence: WBPaper00056617
        Curator_confirmed: WBPerson11281
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00056617
  Remark: 3992/3993-4959/4960 (967 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele