WormBase Tree Display for Variation: WBVar00249772

WBVar00249772 Name: Public_name: tm743
    Other_name: B0395.1.2:c.1018+24_1327delinsG
      B0395.1.1:c.1018+24_1327delinsG
    HGVSg: CHROMOSOME_X:g.16020626_16021053delinsG
  Sequence_details: SMap: S_parent: Sequence: B0395
    Flanking_sequences: ttcctcggtatgttatttaactatcaccat tgtgcggtgttgaagcaataattggagctc
    Mapping_target: B0395
    Source_location: 7 CHROMOSOME_X 16020625 16021054 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: G
      Deletion
    PCR_product: tm743_external
      tm743_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 743
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003729
    Transcript: B0395.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0395.1.1:c.1018+24_1327delinsG
        cDNA_position: ?-1633
        CDS_position: ?-1327
        Protein_position: ?-443
        Intron_number: 11-13/15
        Exon_number: 12-14/16
      B0395.1.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0395.1.2:c.1018+24_1327delinsG
        cDNA_position: ?-1340
        CDS_position: ?-1327
        Protein_position: ?-443
        Intron_number: 10-12/14
        Exon_number: 11-13/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000324 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Dr. N. Tavernarakis: slightly shorter. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Comment to the NBP from Dr. M. Labouesse: no genetic interactions between other vha-5 alleles. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000531 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Dr. N. Tavernarakis: normal development. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Dr. N. Tavernarakis: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000673 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Dr. N. Tavernarakis: normal brood size. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 1506/1507-G-1934/1935 (428 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele