WormBase Tree Display for Variation: WBVar00249841

WBVar00249841 Name: Public_name: tm814
    HGVSg: CHROMOSOME_II:g.5478493_5479021del
  Sequence_details: SMap: S_parent: Sequence: F56D1
    Flanking_sequences: tttgataatttgttctaggatttaaaaatt tggcacatatggtgaattgagagcacatca
    Mapping_target: F56D1
    Source_location: 7 CHROMOSOME_II 5478492 5479022 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm814_external
      tm814_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 814
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018960
      WBGene00018959
    Transcript: F56D1.2.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2602-?
        Exon_number: 11/11
      F56D1.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-310
        CDS_position: ?-308
        Protein_position: ?-103
        Intron_number: 2-3/8
        Exon_number: 1-4/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 33003/33004-33532/33533 (529 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele