WormBase Tree Display for Variation: WBVar00249898

WBVar00249898 Name: Public_name: tm874
    HGVSg: CHROMOSOME_I:g.9658016_9658638del
  Sequence_details: SMap: S_parent: Sequence: C03D6
    Flanking_sequences: agttttgccttttaaagccgagaaaataaa tcaatatgggatggtttgtggcaaatgagt
    Mapping_target: C03D6
    Source_location: 7 CHROMOSOME_I 9658015 9658639 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm874_external
      tm874_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 874
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007278
      WBGene00007277
    Transcript: C03D6.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-322
        CDS_position: ?-322
        Protein_position: ?-108
        Intron_number: 1/5
        Exon_number: 1-2/6
      C03D6.6.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-8
        Exon_number: 1/6
    Interactor: WBInteraction000050626
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype_not_observed: WBPhenotype:0000050 Paper_evidence: WBPaper00032269
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
          WBPerson712
        Remark: Comment from Dr. M. Colaiacovo to the National Bioresource Project of Japan: no embryonic lethality at 20 or 25 C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Comment from Dr. M. Colaiacovo to the National Bioresource Project of Japan: fertile hermaphrodite. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
      WBPhenotype:0000775 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Comment from Dr. M. Colaiacovo to the National Bioresource Project of Japan: No meiotic prophase defects observed on DAPI-stained gonads. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
      WBPhenotype:0000886 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
      WBPhenotype:0001175 Paper_evidence: WBPaper00032269
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
          WBPerson712
        Remark: Comment from Dr. M. Colaiacovo to the National Bioresource Project of Japan: no apparent Him at 20 or 25 C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
  Reference: WBPaper00032269
  Remark: 1189/1190-1812/1813 (623 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele