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WormBase Tree Display for Variation: WBVar00250031

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Name Class

WBVar00250031NamePublic_nametm1011
Other_nameCE19488:p.Asp135LeufsTer60
CE28733:p.Asp117LeufsTer60
H10E21.3b.1:c.399_715del
H10E21.3a.1:c.345_661del
HGVSgCHROMOSOME_III:g.13472_13917del
Sequence_detailsSMapS_parentSequenceH10E21
Flanking_sequencesttttttttattagaaaactcacacaatgctgtctgcggggacacattcgcgaatttctta
Mapping_targetH10E21
Source_location7CHROMOSOME_III1347113918Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm1011_external
tm1011_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004023
WBStrain00034506
WBStrain00034508
WBStrain00034509
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq1011
NBP_allele
StatusLive
AffectsGeneWBGene00003670
TranscriptH10E21.3b.1 (11)
H10E21.3a.1 (11)
InteractorWBInteraction000502412
WBInteraction000502413
WBInteraction000502414
WBInteraction000524837
WBInteraction000535447
WBInteraction000542319
WBInteraction000542320
WBInteraction000542321
IsolationMutagenTMP/UV
GeneticsMapIII
DescriptionPhenotype_not_observedWBPhenotype:0000039Paper_evidenceWBPaper00046225
Curator_confirmedWBPerson712
RemarkHowever, OEA analog supplementation (with KDS-5104) decreased life span in the nhr-80(tm1011) mutant (fig. S15 and table S1).Paper_evidenceWBPaper00046225
Curator_confirmedWBPerson712
WBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
ReferenceWBPaper00046225
WBPaper00062224
Remark9565/9566-10011/10012 (446 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele