WormBase Tree Display for Variation: WBVar00250220

WBVar00250220 Name: Public_name: tm1210
    Other_name: Y56A3A.12a.2:c.-32-968_-32-422delinsC
      Y56A3A.12b.2:c.-32-968_-32-422delinsC
    HGVSg: CHROMOSOME_III:g.11907331_11907877delinsG
  Sequence_details: SMap: S_parent: Sequence: Y56A3A
    Flanking_sequences: aatgcaaatccgctgagcaccttctgaccc ggattcactgtgaaacattggattgaacatgttgcttatgtactctgtagga
    Mapping_target: Y56A3A
    Source_location: 7 CHROMOSOME_III 11907330 11907878 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: G
      Deletion
    PCR_product: tm1210_external
      tm1210_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1210
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013233
      WBGene00013232
    Transcript: Y56A3A.12a.3 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-57
        Exon_number: 1/10
      Y56A3A.12b.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y56A3A.12b.2:c.-32-968_-32-422delinsC
        Intron_number: 1/8
      Y56A3A.14.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-358
        CDS_position: ?-306
        Protein_position: ?-102
        Intron_number: 2/3
        Exon_number: 1-3/4
      Y56A3A.12a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y56A3A.12a.2:c.-32-968_-32-422delinsC
        Intron_number: 1/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
    Mapping_data: In_multi_point: 5445
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C.L. Creasy to the National Bioresource Project of Japan: normal egg-laying. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C.L. Creasy to the National Bioresource Project of Japan: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000661 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C.L. Creasy to the National Bioresource Project of Japan: solitary social feeding. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. C.L. Creasy to the National Bioresource Project of Japan: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 73531/73532-G-74078/74079 (547 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele