WormBase Tree Display for Variation: WBVar00250300

WBVar00250300 Name: Public_name: tm1296
    Other_name: Y59A8B.23c.1:c.1377_*383del
      Y59A8B.23a.1:c.1377_1576+433del
      Y59A8B.23b.1:c.906_1105+433del
    HGVSg: CHROMOSOME_V:g.17955712_17956344del
  Sequence_details: SMap: S_parent: Sequence: Y59A8B
    Flanking_sequences: attaaaaatgttcaaaaaaataaaataaaa ctagccttcttcttcttcttttcacgttcc
    Mapping_target: Y59A8B
    Source_location: 7 CHROMOSOME_V 17955711 17956345 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1296_external
      tm1296_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1296
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013355
    Transcript: Y59A8B.23c.1 VEP_consequence: stop_lost,3_prime_UTR_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.23c.1:c.1377_*383del
        cDNA_position: 1461-2093
        CDS_position: 1377-?
        Protein_position: 459-?
        Exon_number: 7-8/8
      Y59A8B.23b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.23b.1:c.906_1105+433del
        cDNA_position: 906-?
        CDS_position: 906-?
        Protein_position: 302-?
        Intron_number: 4/5
        Exon_number: 4/6
      Y59A8B.23a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.23a.1:c.1377_1576+433del
        cDNA_position: 1377-?
        CDS_position: 1377-?
        Protein_position: 459-?
        Intron_number: 6/8
        Exon_number: 6/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
            Laboratory_evidence: FX
      WBPhenotype:0000574 Paper_evidence: WBPaper00031261
        Curator_confirmed: WBPerson1068
      WBPhenotype:0000688 Paper_evidence: WBPaper00031261
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
          WBPerson1068
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
            Laboratory_evidence: FX
  Reference: WBPaper00031261
  Remark: 26157/26158-26790/26791 (633 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele