WormBase Tree Display for Variation: WBVar00250321

WBVar00250321 Name: Public_name: tm1323
    Other_name: C01H6.5d.1:c.8-219_300del
      CE39086:p.Thr93_Ter216delextTer?
      C01H6.5a.1:c.382_748-1del
      C01H6.5b.1:c.277_643-1del
      C01H6.5f.1:c.277_648del
      C01H6.5c.1:c.8-219_295-1del
    HGVSg: CHROMOSOME_I:g.7219099_7219768del
  Sequence_details: SMap: S_parent: Sequence: C01H6
    Flanking_sequences: aattccaaaagattgacatgtgttattgat gttcgaatgcataaagaattagctgcaaat
    Mapping_target: C01H6
    Source_location: 7 CHROMOSOME_I 7219098 7219769 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1323_external
      tm1323_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1323
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003622
    Transcript: C01H6.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01H6.5d.1:c.8-219_300del
        cDNA_position: ?-300
        CDS_position: ?-300
        Protein_position: ?-100
        Intron_number: 1-4/7
        Exon_number: 2-5/8
      C01H6.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01H6.5a.1:c.382_748-1del
        cDNA_position: 560-?
        CDS_position: 382-?
        Protein_position: 128-?
        Intron_number: 3-6/10
        Exon_number: 3-6/11
      C01H6.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01H6.5c.1:c.8-219_295-1del
        Intron_number: 2-5/9
        Exon_number: 3-5/10
      C01H6.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C01H6.5b.1:c.277_643-1del
        cDNA_position: 314-?
        CDS_position: 277-?
        Protein_position: 93-?
        Intron_number: 2-5/9
        Exon_number: 2-5/10
      C01H6.5f.1 (11)
      C01H6.5e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-4/7
        Exon_number: 1-4/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000057 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Sawa to the National Bioresource Project of Japan: L1-L2 Let. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HS
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 27294/27295-27964/27965 (670 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele