WormBase Tree Display for Variation: WBVar00250332

WBVar00250332 Name: Public_name: tm1335
    Other_name: Y106G6H.12b.1:c.32_443+395delinsGGGAGATCCCCTTT
      Y106G6H.12a.1:c.497_908+395delinsGGGAGATCCCCTTT
    HGVSg: CHROMOSOME_I:g.10469070_10469930delinsAAAGGGGATCTCCC
  Sequence_details: SMap: S_parent: Sequence: Y106G6H
    Flanking_sequences: gaaaaggggagcaacgaaaaggggatctgg aaggagtcagcgtatgttgaagatttacca
    Mapping_target: Y106G6H
    Source_location: 7 CHROMOSOME_I 10469067 10469931 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CAAAAGGGGATCTCCC
      Deletion
    PCR_product: tm1335_external
      tm1335_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1335
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001112
    Transcript: Y106G6H.12a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y106G6H.12a.1:c.497_908+395delinsGGGAGATCCCCTTT
        cDNA_position: 497-?
        CDS_position: 497-?
        Protein_position: 166-?
        Intron_number: 4-5/11
        Exon_number: 4-5/12
      Y106G6H.12b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y106G6H.12b.1:c.32_443+395delinsGGGAGATCCCCTTT
        cDNA_position: 32-?
        CDS_position: 32-?
        Protein_position: 11-?
        Intron_number: 1-2/7
        Exon_number: 1-2/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype_not_observed: WBPhenotype:0000030 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Inoue to National Bioresource Project of Japan: normal growth rate. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000032 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Inoue to National Bioresource Project of Japan: healthy. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
      WBPhenotype:0000315 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Inoue to National Bioresource Project of Japan: normal response to touch and tap stimuli. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Inoue to National Bioresource Project of Japan: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Inoue to National Bioresource Project of Japan: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001225 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. Sawa to National Bioresource Project of Japan: non Psa. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 41910/41911-CAAAAGGGGATCTCCC-42773/42774 (863 bp deletion + 16 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele