WormBase Tree Display for Variation: WBVar00250416

WBVar00250416 Name: Public_name: tm1423
    Other_name: F57B10.1.2:c.587-369_918+105del
      F57B10.1.1:c.587-369_918+105del
    HGVSg: CHROMOSOME_I:g.6581666_6582471del
  Sequence_details: SMap: S_parent: Sequence: F48A9
    Flanking_sequences: gaataacaatttctaagcctaaaaccatta ggacaaatttgagaaaactagttgatagtt
    Mapping_target: F48A9
    Source_location: 7 CHROMOSOME_I 6581665 6582472 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1423_external
      tm1423_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00040745
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1423
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002783
      WBGene00197712
    Transcript: F48A9.4 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F57B10.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F57B10.1.1:c.587-369_918+105del
        Intron_number: 5-6/9
        Exon_number: 6/10
      F57B10.1.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F57B10.1.2:c.587-369_918+105del
        Intron_number: 4-5/8
        Exon_number: 5/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 33281/33282-34087/34088 (806 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target F57B10 updated based on the VEP analysis pipeline to F48A9.
  Method: NBP_knockout_allele