WormBase Tree Display for Variation: WBVar00250418

WBVar00250418 Name: Public_name: tm1425
    Other_name: T26E3.3a.2:c.117_228+209del
      T26E3.3a.1:c.117_228+209del
    HGVSg: CHROMOSOME_I:g.12669742_12670594del
  Sequence_details: SMap: S_parent: Sequence: T26E3
    Flanking_sequences: aataccaatgcattctgcgtctggtgtctc aataaaaaaatcgatttaatattcgggtgt
    Mapping_target: T26E3
    Source_location: 7 CHROMOSOME_I 12669741 12670595 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1425_external
      tm1425_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022498
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1425
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003921
    Transcript: T26E3.3a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T26E3.3a.2:c.117_228+209del
        cDNA_position: 119-?
        CDS_position: 117-?
        Protein_position: 39-?
        Intron_number: 2-3/8
        Exon_number: 2-3/9
      T26E3.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T26E3.3a.1:c.117_228+209del
        cDNA_position: 195-?
        CDS_position: 117-?
        Protein_position: 39-?
        Intron_number: 2-3/8
        Exon_number: 2-3/9
    Interactor: WBInteraction000502825
      WBInteraction000502826
      WBInteraction000502827
      WBInteraction000502828
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 14515/14516-15368/15369 (853 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele