WormBase Tree Display for Variation: WBVar00250465

WBVar00250465 Name: Public_name: tm1473
    Other_name: T01B10.4b.1:c.494_574-57del
      T01B10.4a.1:c.494_574-57del
    HGVSg: CHROMOSOME_X:g.8475152_8475560del
  Sequence_details: SMap: S_parent: Sequence: T01B10
    Flanking_sequences: atgtcacaaactatcacatttcaaatattc tgttcttcatttccgattcgtctctgagaa
    Mapping_target: T01B10
    Source_location: 7 CHROMOSOME_X 8475151 8475561 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1473_external
      tm1473_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1473
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003613
    Transcript: T01B10.4b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T01B10.4b.1:c.494_574-57del
        cDNA_position: 496-?
        CDS_position: 494-?
        Protein_position: 165-?
        Intron_number: 4/7
        Exon_number: 4/8
      T01B10.4a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T01B10.4a.1:c.494_574-57del
        cDNA_position: 494-?
        CDS_position: 494-?
        Protein_position: 165-?
        Intron_number: 3/6
        Exon_number: 3/7
    Interactor: WBInteraction000503386
      WBInteraction000503387
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000039 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. S.S. Lee: no lifespan phenotype. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IU
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000518 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. S.S. Lee: no developmental phenotype. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IU
      WBPhenotype:0000730 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. X. Wang: normal apoptosis. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: XW
  Remark: 6666/6667-7075/7076 (409 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele