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WormBase Tree Display for Variation: WBVar00250470

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Name Class

WBVar00250470NamePublic_nametm1478
Other_nameF33D11.4a.1:c.459+217_460-354del
F33D11.4b.1:c.132+217_133-354del
HGVSgCHROMOSOME_I:g.5841104_5841449del
Sequence_detailsSMapS_parentSequenceF33D11
Flanking_sequencesaattatttgaactttatggggatttaaactcggctgtcggctgtcggctgattggaaaaa
Mapping_targetF33D11
Source_location7CHROMOSOME_I58411035841450Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm1478_external
tm1478_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq1478
NBP_allele
StatusLive
AffectsGeneWBGene00000436
TranscriptF33D11.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF33D11.4b.1:c.132+217_133-354del
Intron_number1/1
F33D11.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF33D11.4a.1:c.459+217_460-354del
Intron_number4/5
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000643Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComment from Dr. D.M. Miller to the National Bioresource Project of Japan: no locomotory perturbations.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark7887/7888-8233/8234 (346 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele