WormBase Tree Display for Variation: WBVar00250483
expand all nodes | collapse all nodes | view schema
| WBVar00250483 | Name | Public_name | tm1491 | ||||
|---|---|---|---|---|---|---|---|
| HGVSg | |||||||
| Sequence_details | SMap | S_parent | Sequence | Y58G8A | |||
| Flanking_sequences | CAAAAGTGCCCGCAGTATGGAGTTTCTCCG | ATTATGGGAATCTCAAAAAAAAATTTAATG | |||||
| Mapping_target | Y58G8A | ||||||
| Type_of_mutation | Insertion | TNTTATTTTTATT | |||||
| Deletion | |||||||
| PCR_product | tm1491_external | ||||||
| tm1491_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | FX | ||||||
| Author | Mitani S | ||||||
| DB_info | Database | National_Bioresource_Project | seq | 1491 | |||
| NBP_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00021983 | |||||
| Transcript | Y58G8A.4b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| cDNA_position | ?-620 | ||||||
| CDS_position | ?-608 | ||||||
| Protein_position | ?-203 | ||||||
| Intron_number | 4/9 | ||||||
| Exon_number | 5/10 | ||||||
| Y58G8A.4a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| cDNA_position | ?-620 | ||||||
| CDS_position | ?-608 | ||||||
| Protein_position | ?-203 | ||||||
| Intron_number | 4/8 | ||||||
| Exon_number | 5/9 | ||||||
| Isolation | Mutagen | TMP/UV | |||||
| Genetics | Map | V | |||||
| Description | Phenotype | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | |||
| Curator_confirmed | WBPerson48 | ||||||
| Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Laboratory_evidence | FX | ||||||
| WBPhenotype:0000688 | Person_evidence | WBPerson7743 | |||||
| Curator_confirmed | WBPerson48 | ||||||
| Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Laboratory_evidence | FX | ||||||
| Remark | 21316/21317-TNTTATTTTTATT-21730/21731 (414 bp deletion + 13 bp insertion) | ||||||
| This knockout was generated by the National BioResource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. PMID 23173093 | Paper_evidence | WBPaper00041807 | |||||
| Method | NBP_knockout_allele |
