WormBase Tree Display for Variation: WBVar00250572

WBVar00250572 Name: Public_name: tm1588
    Other_name: W03D8.6c.1:c.344-185_577del
      W03D8.6b.1:c.344-185_577del
      W03D8.6a.1:c.344-185_577del
    HGVSg: CHROMOSOME_I:g.2804753_2805171del
  Sequence_details: SMap: S_parent: Sequence: W03D8
    Flanking_sequences: tttttttttggcaaatcggcagattgccgg atcaggatattgatgagtgcccgaaagcgg
    Mapping_target: W03D8
    Source_location: 7 CHROMOSOME_I 2804752 2805172 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1588_external
      tm1588_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1588
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002174
    Transcript: W03D8.6b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W03D8.6b.1:c.344-185_577del
        cDNA_position: ?-596
        CDS_position: ?-577
        Protein_position: ?-193
        Intron_number: 4/31
        Exon_number: 5/32
      W03D8.6e.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-76
        CDS_position: ?-76
        Protein_position: ?-26
        Exon_number: 1/27
      W03D8.6d.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-76
        CDS_position: ?-76
        Protein_position: ?-26
        Exon_number: 1/27
      W03D8.6a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W03D8.6a.1:c.344-185_577del
        cDNA_position: ?-577
        CDS_position: ?-577
        Protein_position: ?-193
        Intron_number: 3/29
        Exon_number: 4/30
      W03D8.6c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W03D8.6c.1:c.344-185_577del
        cDNA_position: ?-596
        CDS_position: ?-577
        Protein_position: ?-193
        Intron_number: 4/31
        Exon_number: 5/32
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
    Mapping_data: In_multi_point: 4915
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
    Phenotype_not_observed: WBPhenotype:0000623 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. S. Shaham: no obvious defects in glia development. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 20164/20165-20583/20584 (419 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele