WormBase Tree Display for Variation: WBVar00250573

WBVar00250573 Name: Public_name: tm1589
    Other_name: CE28765:p.Asn20ArgfsTer14
      R12E2.5.2:c.58_259del
      R12E2.5.1:c.58_259del
    HGVSg: CHROMOSOME_I:g.4162114_4162583del
  Sequence_details: SMap: S_parent: Sequence: R12E2
    Flanking_sequences: tatgcgcagacggtcacaagtctgtcggat cgaatcttccagctgctgaaacaagagaag
    Mapping_target: R12E2
    Source_location: 7 CHROMOSOME_I 4162113 4162584 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1589_external
      tm1589_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1589
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002138
    Transcript: R12E2.5.1 (11)
      R12E2.5.2 (11)
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
    Mapping_data: In_multi_point: 4977
  Description: Phenotype: WBPhenotype:0000031 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Comment from Dr. H. Sawa to the National Bioresource Project of Japan: slow growth in larval stage. Dr. C.P. Hunter: slow growth at 20C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
        EQ_annotations: Life_stage: WBls:0000023 PATO:0000460 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson48
      WBPhenotype:0000032 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
          WBPerson48
        Remark: Comments to the National Bioresource Project of Japan: Dr. C. Barmann: Sick. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
          Comments to the National Bioresource Project of Japan: Dr. C. Barmann: Sick Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
        Penetrance: Low: rare Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0000050 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Comment from Dr. H. Sawa to the National Bioresource Project of Japan: rare embryonic lethality (2/100). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
        Penetrance: Low: rare Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson48
          Range: 2 2 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson48
      WBPhenotype:0000154 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
          WBPerson48
        Remark: Comments to the National Bioresource Project of Japan: Dr. C. Barmann: very reduced brood size. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
          Comments to the National Bioresource Project of Japan: Dr. C. Barmann: very reduced brood size. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
        Penetrance: Low: rare Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0000164 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
          WBPerson48
        Remark: Comments to the National Bioresource Project of Japan: Dr. C. Barmann: thin. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
          Comments to the National Bioresource Project of Japan: Dr. C. Barmann: thin Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
        Penetrance: Low: rare Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0000659 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. C. Barmann: High locomotion on food. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Penetrance: Low: rare Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0004028 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Comments to the National Bioresource Project of Japan: Dr. C. Barmann: High locomotion on food Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: HS
  Reference: WBPaper00065282
  Remark: 14520/14521-14990/14991 (470 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele