WormBase Tree Display for Variation: WBVar00250604

WBVar00250604 Name: Public_name: tm1625
    Other_name: C03D6.5.1:c.112+2_405+270del
    HGVSg: CHROMOSOME_I:g.9658387_9658991del
  Sequence_details: SMap: S_parent: Sequence: C03D6
    Flanking_sequences: ttttgaagtttttgagcacttaccacatgg catgagttgaattattttgcgctgcagtag
    Mapping_target: C03D6
    Source_location: 7 CHROMOSOME_I 9658386 9658992 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1625_external
      tm1625_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1625
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00219796
      WBGene00007277
    Transcript: C03D6.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C03D6.5.1:c.112+2_405+270del
        Intron_number: 1-2/5
        Exon_number: 2/6
      C03D6.9.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 38-?
        CDS_position: 38-?
        Protein_position: 13-?
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype_not_observed: WBPhenotype:0000050 Paper_evidence: WBPaper00032269
        Curator_confirmed: WBPerson712
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Comment to the NBP from Dr. M. Colaiacovo: Genes & Dev, 22, 2869 (2008) & Dr. F.P. Finger: Dev. Biol.329, 64 (2009). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Comments to the NBP from Dr. M. Colaiacovo: Genes & Dev, 22, 2869 (2008) & Dr. F.P. Finger: Dev. Biol.329, 64 (2009). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001175 Paper_evidence: WBPaper00032269
        Curator_confirmed: WBPerson712
  Reference: WBPaper00032269
  Remark: 1560/1561-2165/2166 (605 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele