WormBase Tree Display for Variation: WBVar00250609

WBVar00250609 Name: Public_name: tm1630
    Other_name: C26E6.9a.1:c.-44_275del
    HGVSg: CHROMOSOME_III:g.4929747_4930175del
  Sequence_details: SMap: S_parent: Sequence: C26E6
    Flanking_sequences: aaggagttggtttgatataccgatgattgt gcaattttcatccgatgcacagtagaaatc
    Mapping_target: C26E6
    Source_location: 7 CHROMOSOME_III 4929746 4930176 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1630_external
      tm1630_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1630
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004782
    Transcript: C26E6.9c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-275
        CDS_position: ?-275
        Protein_position: ?-92
        Intron_number: 1-2/16
        Exon_number: 1-3/17
      C26E6.9a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C26E6.9a.1:c.-44_275del
        cDNA_position: 30-348
        CDS_position: ?-275
        Protein_position: ?-92
        Intron_number: 2-3/17
        Exon_number: 1-4/18
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr.W.G. Kelly to the National Bioresource Project of Japan: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KW
      WBPhenotype:0000886 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr.W.G. Kelly to the National Bioresource Project of Japan: WT. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KW
  Remark: 12135/12136-12564/12565 (429 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele