WormBase Tree Display for Variation: WBVar00250625

WBVar00250625 Name: Public_name: tm1647
    HGVSg: CHROMOSOME_I:g.4709014_4710058del
  Sequence_details: SMap: S_parent: Sequence: W09C3
    Flanking_sequences: atgctttccttgtcgtacgccgttctgcaa tccacgaagcatgaagaagttctctggata
    Mapping_target: W09C3
    Source_location: 7 CHROMOSOME_I 4709013 4710059 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1647_external
      tm1647_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1647
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021113
    Transcript: W09C3.6.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 460-?
        CDS_position: 364-?
        Protein_position: 122-?
        Intron_number: 3-4/5
        Exon_number: 3-6/6
      W09C3.6.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 383-?
        CDS_position: 364-?
        Protein_position: 122-?
        Intron_number: 2-3/4
        Exon_number: 2-5/5
    Interactor: WBInteraction000501187
      WBInteraction000501188
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0002421 Paper_evidence: WBPaper00049736
        Curator_confirmed: WBPerson1185
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000103 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. G. Hermann to the National Bioresource Project of Japan: wild-type gut granules. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. W. Schafer to the National Bioresource Project of Japan: locomotion grossly normal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Paper_evidence: WBPaper00040337
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. W. Schafer to the National Bioresource Project of Japan: fertile Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00040337
    WBPaper00049736
  Remark: 13189/13190-14234/14235 (1045 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele