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WormBase Tree Display for Variation: WBVar00250641

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Name Class

WBVar00250641NamePublic_nametm1664
HGVSgCHROMOSOME_I:g.9132513_9133128del
Sequence_detailsSMapS_parentSequenceZK858
Flanking_sequencestgtcgcacacctcagatttttttttctattttaagaactagttatttatgaatattatag
Mapping_targetZK858
Source_location7CHROMOSOME_I91325129133129Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm1664_external
tm1664_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq1664
NBP_allele
StatusLive
AffectsGeneWBGene00003209
TranscriptZK858.4b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/7
Exon_number1-3/8
ZK858.4a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/7
Exon_number1-3/8
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. P.E. Mains: Dev. Biol. 302, 438 (2007).Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark21822/21823-22438/22439 (616 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele