WormBase Tree Display for Variation: WBVar00250689

WBVar00250689 Name: Public_name: tm1720
    Other_name: T09A12.4d.1:c.416-204_725-57del
      T09A12.4c.1:c.638-204_947-57del
      T09A12.4a.1:c.176-204_479-57del
      T09A12.4g.1:c.416-204_719-57del
      T09A12.4j.1:c.-182_332-57del
      T09A12.4b.1:c.-182_326-57del
      T09A12.4f.1:c.638-204_941-57del
      T09A12.4h.1:c.176-204_485-57del
    HGVSg: CHROMOSOME_IV:g.8228575_8229536del
  Sequence_details: SMap: S_parent: Sequence: T09A12
    Flanking_sequences: aacgaaagtaagaatttttagattgactac tatagatagatgagaactatatagagaagt
    Mapping_target: T09A12
    Source_location: 7 CHROMOSOME_IV 8228574 8229537 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1720_external
      tm1720_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1720
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003656
    Transcript: T09A12.4i.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/7
        Exon_number: 1-3/8
      T09A12.4c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4c.1:c.638-204_947-57del
        Intron_number: 5-8/13
        Exon_number: 6-8/14
      T09A12.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4b.1:c.-182_326-57del
        cDNA_position: 2303-?
        Intron_number: 2-4/9
        Exon_number: 1-4/10
      T09A12.4f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4f.1:c.638-204_941-57del
        Intron_number: 5-8/13
        Exon_number: 6-8/14
      T09A12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4a.1:c.176-204_479-57del
        Intron_number: 1-4/9
        Exon_number: 2-4/10
      T09A12.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4d.1:c.416-204_725-57del
        Intron_number: 3-6/10
        Exon_number: 4-6/11
      T09A12.4g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4g.1:c.416-204_719-57del
        Intron_number: 3-6/10
        Exon_number: 4-6/11
      T09A12.4j.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4j.1:c.-182_332-57del
        cDNA_position: 42-?
        Intron_number: 2-4/9
        Exon_number: 1-4/10
      T09A12.4e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/7
        Exon_number: 1-3/8
      T09A12.4h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4h.1:c.176-204_485-57del
        Intron_number: 1-4/8
        Exon_number: 2-4/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 14695/14696-15657/15658 (962 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele