WormBase Tree Display for Variation: WBVar00250788

WBVar00250788 Name: Public_name: tm1824
    HGVSg: CHROMOSOME_X:g.2413048_2413910del
  Sequence_details: SMap: S_parent: Sequence: C43H6
    Flanking_sequences: agaatttcaatttttgaaagtttcttttca ctggcgctacttcacatttaaaaacttaaa
    Mapping_target: C43H6
    Source_location: 7 CHROMOSOME_X 2413047 2413911 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1824_external
      tm1824_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1824
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001959
      WBGene00001618
    Transcript: C43H6.9a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2263-?
        Exon_number: 14/14
      C43H6.8.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-280
        CDS_position: ?-191
        Protein_position: ?-64
        Intron_number: 2/3
        Exon_number: 1-3/4
      C43H6.9a.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2409-?
        Exon_number: 17/17
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0001182 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. K. Ashrafi to the National Bioresource Project of Japan: has altered fat content at L4 and adult stage. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        EQ_annotations: Life_stage: WBls:0000038 PATO:0000460 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson712
            WBls:0000041 PATO:0000460 Person_evidence: WBPerson7743
                Curator_confirmed: WBPerson712
      WBPhenotype:0001434 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project from Dr. T. Ishihara: normal chemotaxis to diacetyl, isoamylalcohol and benzaldehyde. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Affected_by: Molecule: WBMol:00002819 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
            WBMol:00001063 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
            WBMol:00002087 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000032 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. K. Ashrafi to the National Bioresource Project of Japan: healthy. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. K. Ashrafi to the National Bioresource Project of Japan: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001510 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. O. Hobert: ASE and AIY fate markers normal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 17822/17823-18685/18686 (863 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele