WormBase Tree Display for Variation: WBVar00250820

WBVar00250820 Name: Public_name: tm1856
    Other_name: C31H2.1a.1:c.712+156_853-14del
      C31H2.1c.2:c.286+156_427-14del
      C31H2.1b.1:c.592+156_733-14del
      C31H2.1c.1:c.286+156_427-14del
    HGVSg: CHROMOSOME_X:g.5142539_5143408del
  Sequence_details: SMap: S_parent: Sequence: C31H2
    Flanking_sequences: gagattgccagttgcaatgtttttctttgt aataatttttcagtcaatctacccgttgtg
    Mapping_target: C31H2
    Source_location: 7 CHROMOSOME_X 5142538 5143409 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1856_external
      tm1856_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1856
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016292
    Transcript: C31H2.1c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C31H2.1c.2:c.286+156_427-14del
        Intron_number: 4-5/15
        Exon_number: 5/16
      C31H2.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C31H2.1b.1:c.592+156_733-14del
        Intron_number: 6-7/17
        Exon_number: 7/18
      C31H2.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C31H2.1a.1:c.712+156_853-14del
        Intron_number: 8-9/19
        Exon_number: 9/20
      C31H2.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C31H2.1c.1:c.286+156_427-14del
        Intron_number: 5-6/16
        Exon_number: 6/17
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. J. Kaplan: Let, could not determine Egl or Unc. Dr. I. Mori: thermotaxis assay impossible. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
              KP
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 20987/20988-21857/21858 (870 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele