WormBase Tree Display for Variation: WBVar00250893

WBVar00250893 Name: Public_name: tm1932
    Other_name: F48E8.3.2:c.147+36_516del
      F48E8.3.1:c.147+36_516del
    HGVSg: CHROMOSOME_III:g.5461598_5462337del
  Sequence_details: SMap: S_parent: Sequence: F48E8
    Flanking_sequences: atcttgcgaatttttgaaaaaaatctattt ggaattttgagagaaaatggaaaagtatcg
    Mapping_target: F48E8
    Source_location: 7 CHROMOSOME_III 5461597 5462338 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1932_external
      tm1932_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1932
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018610
    Transcript: F48E8.3.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F48E8.3.1:c.147+36_516del
        cDNA_position: ?-553
        CDS_position: ?-516
        Protein_position: ?-172
        Intron_number: 2/5
        Exon_number: 3/6
      F48E8.3.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F48E8.3.2:c.147+36_516del
        cDNA_position: ?-518
        CDS_position: ?-516
        Protein_position: ?-172
        Intron_number: 2/5
        Exon_number: 3/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 18365/18366-19105/19106 (740 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele