WormBase Tree Display for Variation: WBVar00251011

WBVar00251011 Name: Public_name: tm2066
    HGVSg: CHROMOSOME_III:g.12367443_12368486del
  Sequence_details: SMap: S_parent: Sequence: Y49E10
    Flanking_sequences: ttcaaaactgcggcggcgtggaatatagtt atatgattgaaaaagcgcgcgcaccctgac
    Mapping_target: Y49E10
    Source_location: 7 CHROMOSOME_III 12367442 12368487 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2066_external
      tm2066_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00007461
      WBStrain00007575
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2066
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00220172
      WBGene00001946
    Transcript: Y49E10.6a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2/3
        Exon_number: 1-4/4
      Y49E10.36 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: 59-?
        Exon_number: 1/1
      Y49E10.6b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-2/2
        Exon_number: 2-3/3
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Dr. W.G. Kelly: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
      WBPhenotype:0000886 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Dr. W.G. Kelly: appear WT. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
  Remark: 38/39-1082/1083 (1044 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele