WormBase Tree Display for Variation: WBVar00251039

WBVar00251039 Name: Public_name: tm2099
    Other_name: F47F6.1d.1:c.725+54_739del
      F47F6.1c.1:c.554+54_568del
      F47F6.1b.1:c.554+54_568del
      F47F6.1f.1:c.725+54_739del
    HGVSg: CHROMOSOME_II:g.1240794_1241153del
  Sequence_details: SMap: S_parent: Sequence: F47F6
    Flanking_sequences: taccaatgagatcggtgggtaggagaccaa tttaagcggcctaattatggcccaagaagc
    Mapping_target: F47F6
    Source_location: 7 CHROMOSOME_II 1240793 1241154 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2099_external
      tm2099_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2099
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018572
    Transcript: F47F6.1d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F47F6.1d.1:c.725+54_739del
        cDNA_position: ?-739
        CDS_position: ?-739
        Protein_position: ?-247
        Intron_number: 4/9
        Exon_number: 5/10
      F47F6.1b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F47F6.1b.1:c.554+54_568del
        cDNA_position: ?-588
        CDS_position: ?-568
        Protein_position: ?-190
        Intron_number: 4/10
        Exon_number: 5/11
      F47F6.1f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F47F6.1f.1:c.725+54_739del
        cDNA_position: ?-739
        CDS_position: ?-739
        Protein_position: ?-247
        Intron_number: 4/5
        Exon_number: 5/6
      F47F6.1c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F47F6.1c.1:c.554+54_568del
        cDNA_position: ?-588
        CDS_position: ?-568
        Protein_position: ?-190
        Intron_number: 4/6
        Exon_number: 5/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 15330/15331-15690/15691 (360 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele