WormBase Tree Display for Variation: WBVar00251107

WBVar00251107 Name: Public_name: tm2171
    Other_name: W03A3.2.1:c.1183_1198+320del
    HGVSg: CHROMOSOME_III:g.5800903_5801238del
  Sequence_details: SMap: S_parent: Sequence: W03A3
    Flanking_sequences: ccacgaataattgagcatgttcaacaacaa tgttcttcccgctcttcccaccatctgacg
    Mapping_target: W03A3
    Source_location: 7 CHROMOSOME_III 5800902 5801239 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2171_external
      tm2171_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2171
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00020964
      WBGene00000435
    Transcript: W03A3.1.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 915-?
        CDS_position: 889-?
        Protein_position: 297-?
        Exon_number: 6-7/7
      W03A3.2.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W03A3.2.1:c.1183_1198+320del
        cDNA_position: 1301-?
        CDS_position: 1183-?
        Protein_position: 395-?
        Intron_number: 6/20
        Exon_number: 6/21
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Paper_evidence: WBPaper00031868
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Paper_evidence: WBPaper00031868
        Curator_confirmed: WBPerson712
  Reference: WBPaper00031868
  Remark: 13291/13292-13627/13628 (336 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele