WormBase Tree Display for Variation: WBVar00251144

WBVar00251144 Name: Public_name: tm2218
    Other_name: B0024.14f.1:c.634+11_767delinsA
      B0024.14d.1:c.709+11_842delinsA
      B0024.14b.1:c.907+11_1040delinsA
      B0024.14a.1:c.709+11_842delinsA
    HGVSg: CHROMOSOME_V:g.10324898_10325089delinsT
  Sequence_details: SMap: S_parent: Sequence: B0024
    Flanking_sequences: tatttctcgcacatatgagcaccaagttcg ataaactaacgattcacttttgggcatgtc
    Mapping_target: B0024
    Source_location: 7 CHROMOSOME_V 10324897 10325090 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: T
      Deletion
    PCR_product: tm2218_external
      tm2218_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2218
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007103
    Transcript: B0024.14b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0024.14b.1:c.907+11_1040delinsA
        cDNA_position: ?-1108
        CDS_position: ?-1040
        Protein_position: ?-347
        Intron_number: 6/16
        Exon_number: 7/17
      B0024.14f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0024.14f.1:c.634+11_767delinsA
        cDNA_position: ?-767
        CDS_position: ?-767
        Protein_position: ?-256
        Intron_number: 3/13
        Exon_number: 4/14
      B0024.14a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0024.14a.1:c.709+11_842delinsA
        cDNA_position: ?-845
        CDS_position: ?-842
        Protein_position: ?-281
        Intron_number: 5/16
        Exon_number: 6/17
      B0024.14d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0024.14d.1:c.709+11_842delinsA
        cDNA_position: ?-842
        CDS_position: ?-842
        Protein_position: ?-281
        Intron_number: 4/14
        Exon_number: 5/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
    Mapping_data: In_multi_point: 5658
  Description: Phenotype: WBPhenotype:0000638 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. A. Frand: molting defective. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: ARF
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. P. Bazzicalupo to the National Bioresource Project of Japan: normal egg laying. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: NA
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. P. Bazzicalupo to the National Bioresource Project of Japan: normal fertility. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: NA
  Remark: 38329/38330-T-38521/38522 (192 bp deletion +1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele