WormBase Tree Display for Variation: WBVar00251259

WBVar00251259 Name: Public_name: tm2364
    Other_name: CE47796:p.Thr481LysfsTer3
      CE47774:p.Thr485LysfsTer3
      T03D8.5c.1:c.1442_1695del
      T03D8.5b.1:c.1454_1707del
      CE43349:p.Thr489LysfsTer3
      T03D8.5a.1:c.1466_1719del
    HGVSg: CHROMOSOME_V:g.20822373_20822673del
  Sequence_details: SMap: S_parent: Sequence: T03D8
    Flanking_sequences: cacttttctgaacatagctctgtcattttt tagaaattacagcaattatcaaaaccaatg
    Mapping_target: T03D8
    Source_location: 7 CHROMOSOME_V 20822372 20822674 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2364_external
      tm2364_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00029479
      WBStrain00047981
      WBStrain00047982
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2364
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001547
    Transcript: T03D8.5c.1 (11)
      T03D8.5a.1 (11)
      T03D8.5b.1 (11)
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype (11)
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000247 Paper_evidence: WBPaper00033467
        Curator_confirmed: WBPerson712
        Remark: gcy-22 animals display significantly weaker attraction to all salts tested, with the exception of ASEL-sensed Na+ Paper_evidence: WBPaper00033467
            Curator_confirmed: WBPerson712
        Variation_effect: Null: Paper_evidence: WBPaper00033467
            Curator_confirmed: WBPerson712
      WBPhenotype:0000302 Paper_evidence: WBPaper00033467
        Curator_confirmed: WBPerson712
        Remark: Odortaxis to a point source of the AWC sensed odorant benzaldehyde is similar to the wild-type response (data not shown). Paper_evidence: WBPaper00033467
            Curator_confirmed: WBPerson712
        Variation_effect: Null: Paper_evidence: WBPaper00033467
            Curator_confirmed: WBPerson712
      WBPhenotype:0001765 Paper_evidence: WBPaper00037908
        Curator_confirmed: WBPerson557
  Reference: WBPaper00037088
    WBPaper00033467
    WBPaper00042411
    WBPaper00060362
    WBPaper00037908
  Remark: 6535/6536-6836/6837 (301 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele