WormBase Tree Display for Variation: WBVar00251264

WBVar00251264 Name: Public_name: tm2371
    Other_name: C34D4.14h.1:c.2343+86_3023del
      C34D4.14e.1:c.2454+86_3134del
      C34D4.14g.1:c.2343+86_3035del
      C34D4.14d.1:c.2454+86_3128del
      C34D4.14e.2:c.2454+86_3134del
      C34D4.14b.1:c.2343+86_3029del
      C34D4.14a.2:c.2454+86_3140del
      C34D4.14c.1:c.2343+86_3017del
      C34D4.14a.1:c.2454+86_3140del
      C34D4.14f.1:c.2454+86_3146del
    HGVSg: CHROMOSOME_IV:g.7140581_7141570del
  Sequence_details: SMap: S_parent: Sequence: C34D4
    Flanking_sequences: ttttccatcattgataaaaggccaaaaagc tcaattattgagatttaactattcaactga
    Mapping_target: C34D4
    Source_location: 7 CHROMOSOME_IV 7140580 7141571 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2371_external
      tm2371_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2371
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016405
    Transcript: C34D4.14d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14d.1:c.2454+86_3128del
        cDNA_position: ?-3234
        CDS_position: ?-3128
        Protein_position: ?-1043
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14c.1:c.2343+86_3017del
        cDNA_position: ?-3125
        CDS_position: ?-3017
        Protein_position: ?-1006
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14h.1:c.2343+86_3023del
        cDNA_position: ?-3135
        CDS_position: ?-3023
        Protein_position: ?-1008
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14a.1:c.2454+86_3140del
        cDNA_position: ?-3246
        CDS_position: ?-3140
        Protein_position: ?-1047
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14a.2:c.2454+86_3140del
        cDNA_position: ?-3147
        CDS_position: ?-3140
        Protein_position: ?-1047
        Intron_number: 8-11/22
        Exon_number: 9-12/23
      C34D4.14b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14b.1:c.2343+86_3029del
        cDNA_position: ?-3135
        CDS_position: ?-3029
        Protein_position: ?-1010
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14f.1:c.2454+86_3146del
        cDNA_position: ?-3258
        CDS_position: ?-3146
        Protein_position: ?-1049
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14e.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14e.2:c.2454+86_3134del
        cDNA_position: ?-3140
        CDS_position: ?-3134
        Protein_position: ?-1045
        Intron_number: 8-11/22
        Exon_number: 9-12/23
      C34D4.14g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14g.1:c.2343+86_3035del
        cDNA_position: ?-3148
        CDS_position: ?-3035
        Protein_position: ?-1012
        Intron_number: 9-12/23
        Exon_number: 10-13/24
      C34D4.14e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34D4.14e.1:c.2454+86_3134del
        cDNA_position: ?-3246
        CDS_position: ?-3134
        Protein_position: ?-1045
        Intron_number: 9-12/23
        Exon_number: 10-13/24
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000030 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. A. Dernburg: No defects in growth Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
          Comment to the National Bioresource Project of Japan from Dr. A. Dernburg: No defects in growth. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Comments to the NBP from Dr. A. Dernburg: No defects in growth, or fertility. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000145 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. A. Dernburg: No defects in fertility. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. A. Dernburg: No defects in fertility. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001499 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. A. Dernburg: No defects in meiotic chromosome behavior. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
          Comment to the National Bioresource Project of Japan from Dr. A. Dernburg: no defects in meiotic chromosome behavior. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 25747/25748-26737/26738 (990 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele