WormBase Tree Display for Variation: WBVar00251269

WBVar00251269 Name: Public_name: tm2376
    Other_name: F19B6.1b.1:c.275_603+52delinsTTCGG
      F19B6.1a.3:c.155_483+52delinsTTCGG
      F19B6.1d.1:c.317_645+52delinsTTCGG
      F19B6.1a.2:c.155_483+52delinsTTCGG
      F19B6.1a.1:c.155_483+52delinsTTCGG
    HGVSg: CHROMOSOME_IV:g.12333500_12333880delinsCCGAA
  Sequence_details: SMap: S_parent: Sequence: F19B6
    Flanking_sequences: gaacgaggaagtgctgagacccatctgaat gtggacgtcctttcgtatatattttctaaa
    Mapping_target: F19B6
    Source_location: 7 CHROMOSOME_IV 12333499 12333881 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CCGAA
      Deletion
    PCR_product: tm2376_external
      tm2376_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2376
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008948
    Transcript: F19B6.1a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19B6.1a.2:c.155_483+52delinsTTCGG
        cDNA_position: 351-?
        CDS_position: 155-?
        Protein_position: 52-?
        Intron_number: 5/9
        Exon_number: 5/10
      F19B6.1d.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19B6.1d.1:c.317_645+52delinsTTCGG
        cDNA_position: 317-?
        CDS_position: 317-?
        Protein_position: 106-?
        Intron_number: 4/7
        Exon_number: 4/8
      F19B6.1b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19B6.1b.1:c.275_603+52delinsTTCGG
        cDNA_position: 275-?
        CDS_position: 275-?
        Protein_position: 92-?
        Intron_number: 3/6
        Exon_number: 3/7
      F19B6.1a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19B6.1a.1:c.155_483+52delinsTTCGG
        cDNA_position: 276-?
        CDS_position: 155-?
        Protein_position: 52-?
        Intron_number: 4/8
        Exon_number: 4/9
      F19B6.1a.3 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19B6.1a.3:c.155_483+52delinsTTCGG
        cDNA_position: 174-?
        CDS_position: 155-?
        Protein_position: 52-?
        Intron_number: 3/7
        Exon_number: 3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 15127/15128-CCGAA-15508/15509 (381 bp deletion + 5 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele