WormBase Tree Display for Variation: WBVar00251610
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WBVar00251610 | Name | Public_name | tm2772 | ||||||
---|---|---|---|---|---|---|---|---|---|
Other_name | F47G4.7.3:c.233_914del | ||||||||
CE18705:p.Tyr78LeufsTer30 | |||||||||
F47G4.7.2:c.233_914del | |||||||||
F47G4.7.1:c.233_914del | |||||||||
HGVSg | CHROMOSOME_I:g.14049274_14050051del | ||||||||
Sequence_details | SMap | S_parent | Sequence | F47G4 | |||||
Flanking_sequences | tgggcatccttccccttctccgaaatgtca | aagagtcgatggactcgttgtgcttggagt | |||||||
Mapping_target | F47G4 | ||||||||
Source_location | 7 | CHROMOSOME_I | 14049273 | 14050052 | Inferred_automatically | National_Bioresource_Project | |||
Type_of_mutation | Deletion | ||||||||
PCR_product | tm2772_external | ||||||||
tm2772_internal | |||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Laboratory | FX | ||||||||
Author | Mitani S | ||||||||
DB_info | Database | National_Bioresource_Project | seq | 2772 | |||||
NBP_allele | |||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00004875 | |||||||
Transcript | F47G4.7.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F47G4.7.3:c.233_914del | ||||||||
HGVSp | CE18705:p.Tyr78LeufsTer30 | ||||||||
cDNA_position | 462-1143 | ||||||||
CDS_position | 233-914 | ||||||||
Protein_position | 78-305 | ||||||||
Intron_number | 2-3/5 | ||||||||
Exon_number | 2-4/6 | ||||||||
Codon_change | tACGTGCTCAGCGAGTCCTCTCTGTTCATCTCGGACAACCGTGTGATCCTCAAGACCTGTGGCACAACTCGCTTGCTGGCTGCCCTTCCAGTGATCATGCAGCTAGCCGGGGCCTACGCCGGGCTGGATCAAGTCCAATCCGTCTACTACTCCAGGAAGAACTTCTTGCGCCCGGATCTTCAACCATCGCTTCATAAGAACTTTGATGCGGAGGTGGAGTATCTGGATAGTTTTTTTGTGGATGGTCATGCGTACTGTCTTGGATCCCTCAAACAGGATAGATGGTACCTTTACACATTCCACAGAGAAGTTGAGTTCCCAGCTCACAAGCAACCCGATCACACCTTGGAGATCTTGATGAGCGATCTGGATGAGGAGGTGCTCCACAAGTTTACCAAAGACTATGCGGTGGATGGCAATGACTGCTTCATGGTAAGCCCTCGCGATGGGAGTCCGATGATCTTTAATCAATTCTTTACAGCGAGCCGGTATTGACAAGATCATCCCGGCAGGTGCAGATGTTCACGACGAGCTGTTCGACCCGTGCGGCTACAGTATGAACGCTTATATGAATGACACTGACCAATACGCAACCATCCACGTGACTCCCGAGAAGGCATTCAGCTTCGCTTCCTTCGAGACCAACCAGGACTTGGTCTGCCTGTACTCGCAGACTCGGAAGGTTCTTCAGTGTTTCAGGTGAGTATTTAGAAAAACTTAATGTAGTTCAACAAAGTTCCTTACAGACCAAATAAGATCTTGATGACAGTCTTTGCCAAt/tt | ||||||||
Amino_acid_change | YVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMVSPRDGSPMIFNQFFTASRY*QDHPGRCRCSRRAVRPVRLQYERLYE*H*PIRNHPRDSREGIQLRFLRDQPGLGLPVLADSEGSSVFQVSI*KNLM*FNKVPYRPNKILMTVFAN/X | ||||||||
F47G4.7.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F47G4.7.2:c.233_914del | ||||||||
HGVSp | CE18705:p.Tyr78LeufsTer30 | ||||||||
cDNA_position | 907-1588 | ||||||||
CDS_position | 233-914 | ||||||||
Protein_position | 78-305 | ||||||||
Intron_number | 3-4/6 | ||||||||
Exon_number | 3-5/7 | ||||||||
Codon_change | tACGTGCTCAGCGAGTCCTCTCTGTTCATCTCGGACAACCGTGTGATCCTCAAGACCTGTGGCACAACTCGCTTGCTGGCTGCCCTTCCAGTGATCATGCAGCTAGCCGGGGCCTACGCCGGGCTGGATCAAGTCCAATCCGTCTACTACTCCAGGAAGAACTTCTTGCGCCCGGATCTTCAACCATCGCTTCATAAGAACTTTGATGCGGAGGTGGAGTATCTGGATAGTTTTTTTGTGGATGGTCATGCGTACTGTCTTGGATCCCTCAAACAGGATAGATGGTACCTTTACACATTCCACAGAGAAGTTGAGTTCCCAGCTCACAAGCAACCCGATCACACCTTGGAGATCTTGATGAGCGATCTGGATGAGGAGGTGCTCCACAAGTTTACCAAAGACTATGCGGTGGATGGCAATGACTGCTTCATGGTAAGCCCTCGCGATGGGAGTCCGATGATCTTTAATCAATTCTTTACAGCGAGCCGGTATTGACAAGATCATCCCGGCAGGTGCAGATGTTCACGACGAGCTGTTCGACCCGTGCGGCTACAGTATGAACGCTTATATGAATGACACTGACCAATACGCAACCATCCACGTGACTCCCGAGAAGGCATTCAGCTTCGCTTCCTTCGAGACCAACCAGGACTTGGTCTGCCTGTACTCGCAGACTCGGAAGGTTCTTCAGTGTTTCAGGTGAGTATTTAGAAAAACTTAATGTAGTTCAACAAAGTTCCTTACAGACCAAATAAGATCTTGATGACAGTCTTTGCCAAt/tt | ||||||||
Amino_acid_change | YVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMVSPRDGSPMIFNQFFTASRY*QDHPGRCRCSRRAVRPVRLQYERLYE*H*PIRNHPRDSREGIQLRFLRDQPGLGLPVLADSEGSSVFQVSI*KNLM*FNKVPYRPNKILMTVFAN/X | ||||||||
F47G4.7.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,frameshift_variant,stop_lost,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F47G4.7.1:c.233_914del | ||||||||
HGVSp | CE18705:p.Tyr78LeufsTer30 | ||||||||
cDNA_position | 687-1368 | ||||||||
CDS_position | 233-914 | ||||||||
Protein_position | 78-305 | ||||||||
Intron_number | 4-5/7 | ||||||||
Exon_number | 4-6/8 | ||||||||
Codon_change | tACGTGCTCAGCGAGTCCTCTCTGTTCATCTCGGACAACCGTGTGATCCTCAAGACCTGTGGCACAACTCGCTTGCTGGCTGCCCTTCCAGTGATCATGCAGCTAGCCGGGGCCTACGCCGGGCTGGATCAAGTCCAATCCGTCTACTACTCCAGGAAGAACTTCTTGCGCCCGGATCTTCAACCATCGCTTCATAAGAACTTTGATGCGGAGGTGGAGTATCTGGATAGTTTTTTTGTGGATGGTCATGCGTACTGTCTTGGATCCCTCAAACAGGATAGATGGTACCTTTACACATTCCACAGAGAAGTTGAGTTCCCAGCTCACAAGCAACCCGATCACACCTTGGAGATCTTGATGAGCGATCTGGATGAGGAGGTGCTCCACAAGTTTACCAAAGACTATGCGGTGGATGGCAATGACTGCTTCATGGTAAGCCCTCGCGATGGGAGTCCGATGATCTTTAATCAATTCTTTACAGCGAGCCGGTATTGACAAGATCATCCCGGCAGGTGCAGATGTTCACGACGAGCTGTTCGACCCGTGCGGCTACAGTATGAACGCTTATATGAATGACACTGACCAATACGCAACCATCCACGTGACTCCCGAGAAGGCATTCAGCTTCGCTTCCTTCGAGACCAACCAGGACTTGGTCTGCCTGTACTCGCAGACTCGGAAGGTTCTTCAGTGTTTCAGGTGAGTATTTAGAAAAACTTAATGTAGTTCAACAAAGTTCCTTACAGACCAAATAAGATCTTGATGACAGTCTTTGCCAAt/tt | ||||||||
Amino_acid_change | YVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMVSPRDGSPMIFNQFFTASRY*QDHPGRCRCSRRAVRPVRLQYERLYE*H*PIRNHPRDSREGIQLRFLRDQPGLGLPVLADSEGSSVFQVSI*KNLM*FNKVPYRPNKILMTVFAN/X | ||||||||
Isolation | Mutagen | TMP/UV | |||||||
Genetics | Map | I | |||||||
Description | Phenotype | WBPhenotype:0000154 | Paper_evidence | WBPaper00035239 | |||||
Curator_confirmed | WBPerson2757 | ||||||||
WBPhenotype:0000229 | Paper_evidence | WBPaper00035239 | |||||||
Curator_confirmed | WBPerson2757 | ||||||||
WBPhenotype:0002270 | Paper_evidence | WBPaper00035239 | |||||||
Curator_confirmed | WBPerson2757 | ||||||||
EQ_annotations | Molecule_affected | WBMol:00004777 | PATO:0001997 | Paper_evidence | WBPaper00035239 | ||||
Curator_confirmed | WBPerson2757 | ||||||||
Phenotype_not_observed | WBPhenotype:0000048 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Comment to the National BioResource Project of Japan from Dr. K.F. O'Connell: normal hatching. | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000062 | Person_evidence | WBPerson7743 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Classified as homozygous viable by the National BioResource Project of Japan. | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000072 | Person_evidence | WBPerson7743 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Comment to the National BioResource Project of Japan from Dr. K.F. O'Connell: normal body shape. | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000643 | Person_evidence | WBPerson7743 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Comment to the National BioResource Project of Japan from Dr. K.F. O'Connell: normal locomotion. | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00035239 | ||||||||
Remark | 568/569-1346/1347 (778 bp deletion) | ||||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | |||||||
Method | NBP_knockout_allele |