WormBase Tree Display for Variation: WBVar00251634

WBVar00251634 Name: Public_name: tm2805
    Other_name: R01E6.3a.1:c.525+8_558del
      R01E6.3b.1:c.390+8_423del
    HGVSg: CHROMOSOME_X:g.13543762_13544040del
  Sequence_details: SMap: S_parent: Sequence: R01E6
    Flanking_sequences: cggttgttggagtcttcttgaaggtttgtg atcgacacagtgcgcaaagccaccggaaat
    Mapping_target: R01E6
    Source_location: 7 CHROMOSOME_X 13543761 13544041 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2805_external
      tm2805_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2805
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000282
    Transcript: R01E6.3a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R01E6.3a.1:c.525+8_558del
        cDNA_position: ?-567
        CDS_position: ?-558
        Protein_position: ?-186
        Intron_number: 5/7
        Exon_number: 6/8
      R01E6.3b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R01E6.3b.1:c.390+8_423del
        cDNA_position: ?-475
        CDS_position: ?-423
        Protein_position: ?-141
        Intron_number: 5/7
        Exon_number: 6/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
            Laboratory_evidence: FX
  Remark: 11693/11694-11972/11973 (279 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele