WormBase Tree Display for Variation: WBVar00251696

WBVar00251696 Name: Public_name: tm2875
    Other_name: F46C5.3.1:c.280+45_678delinsCAAA
    HGVSg: CHROMOSOME_II:g.8826850_8827504delinsCAAA
  Sequence_details: SMap: S_parent: Sequence: F46C5
    Flanking_sequences: gagtgaatattttttaaaaatcttgttaac ttcgatcaaattaatcagtattatcagtgt
    Mapping_target: F46C5
    Source_location: 7 CHROMOSOME_II 8826849 8827505 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CAAA
      Deletion
    PCR_product: tm2875_external
      tm2875_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2875
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003544
    Transcript: F46C5.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F46C5.3.1:c.280+45_678delinsCAAA
        cDNA_position: ?-719
        CDS_position: ?-678
        Protein_position: ?-226
        Intron_number: 5-8/11
        Exon_number: 6-9/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson2021
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson2021
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson2021
  Remark: 16685/16686-CAAA-17340/17341 (655 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele