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WormBase Tree Display for Variation: WBVar00251741

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Name Class

WBVar00251741NamePublic_nametm2935
HGVSgCHROMOSOME_I:g.5101569_5101740del
Sequence_detailsSMapS_parentSequenceY110A7A
Flanking_sequencesagatgatccagtgcttcttcagatgacgatgtagatgagatcctattgcttctttctttt
Mapping_targetY110A7A
Source_location7CHROMOSOME_I51015685101741Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2935_external
tm2935_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2935
NBP_allele
StatusLive
AffectsGeneWBGene00004959
WBGene00022465
TranscriptY110A7A.20.1VEP_consequencecoding_sequence_variant,3_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position300-?
CDS_position285-?
Protein_position95-?
Exon_number4-5/5
Y110A7A.12.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position1594-?
Exon_number6/6
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark933/934-1105/1106 (172 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele