WormBase Tree Display for Variation: WBVar00251838

WBVar00251838 Name: Public_name: tm3055
    Other_name: C18A11.5b.1:c.66_354+5del
      C18A11.5c.1:c.66_354+5del
    HGVSg: CHROMOSOME_X:g.8041392_8041776del
  Sequence_details: SMap: S_parent: Sequence: C18A11
    Flanking_sequences: aatattggggattgataggagcgaaaacag ttatcaggattttttagatactgaacgatc
    Mapping_target: C18A11
    Source_location: 7 CHROMOSOME_X 8041391 8041777 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3055_external
      tm3055_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3055
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006962
      WBGene00305277
    Transcript: C18A11.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C18A11.5c.1:c.66_354+5del
        cDNA_position: 66-?
        CDS_position: 66-?
        Protein_position: 22-?
        Intron_number: 1-3/6
        Exon_number: 1-3/7
      C18A11.14
      C18A11.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C18A11.5b.1:c.66_354+5del
        cDNA_position: 80-?
        CDS_position: 66-?
        Protein_position: 22-?
        Intron_number: 2-4/8
        Exon_number: 2-4/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000065 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Comments to the National Bioresource Project of Japan: Dr. H. Zhang: male Let. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson557
        Remark: Comments to the National Bioresource Project of Japan: Dr. H. Zhang: normal locomotion Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson557
  Remark: 8184/8185-8569/8570 (385 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele