WormBase Tree Display for Variation: WBVar00251959

WBVar00251959 Name: Public_name: tm3200
    Other_name: C27F2.5.2:c.321+25_657delinsCTTGGTTTCGGTTTA
      C27F2.5.1:c.321+25_657delinsCTTGGTTTCGGTTTA
    HGVSg: CHROMOSOME_III:g.4960765_4961231delinsTAAACCGAAACCAAG
  Sequence_details: SMap: S_parent: Sequence: C27F2
    Flanking_sequences: ttcatctgtccatgcgagtccttccttcac acataataatcagacattttttacctcaac
    Mapping_target: C27F2
    Source_location: 7 CHROMOSOME_III 4960764 4961232 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TAAACCGAAACCAAG
      Deletion
    PCR_product: tm3200_external
      tm3200_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3200
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016167
    Transcript: C27F2.5.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C27F2.5.2:c.321+25_657delinsCTTGGTTTCGGTTTA
        cDNA_position: ?-990
        CDS_position: ?-657
        Protein_position: ?-219
        Intron_number: 8-10/11
        Exon_number: 9-11/12
      C27F2.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C27F2.5.1:c.321+25_657delinsCTTGGTTTCGGTTTA
        cDNA_position: ?-658
        CDS_position: ?-657
        Protein_position: ?-219
        Intron_number: 5-7/8
        Exon_number: 6-8/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000057 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. M. Han: early larval lethal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MH
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. M. Han: early larval lethal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
              MH
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 3381/3382-TAAACCGAAACCAAG-3848/3849 (467 bp deletion + 15 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele