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WormBase Tree Display for Variation: WBVar00251970

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Name Class

WBVar00251970NamePublic_nametm3220
Other_nameCE41240:p.Thr125AlafsTer6
F41E6.4a.1:c.1081_1411del
F41E6.4b.1:c.373_703del
CE41239:p.Thr361AlafsTer6
F41E6.4b.2:c.373_703del
HGVSgCHROMOSOME_V:g.8612231_8612561del
Sequence_detailsSMapS_parentSequenceF41E6
Flanking_sequencesgttttccggatgtgcgaagatattgaacatgccgtgtcgacattgtaacgctacttcaaa
Mapping_targetF41E6
Source_location7CHROMOSOME_V86122308612562Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm3220_external
tm3220_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq3220
NBP_allele
StatusLive
AffectsGeneWBGene00018285
TranscriptF41E6.4b.2VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF41E6.4b.2:c.373_703del
HGVSpCE41240:p.Thr125AlafsTer6
cDNA_position607-937
CDS_position373-703
Protein_position125-235
Exon_number4/9
Codon_changeACAGAAGGACTACGAACTTTTTATTCAATCGTGAAGAACCTGTTCATGCTCAACCGAAACACTGTTATCGAAATGCTTCTCGACGATAATAATATCAAAGACGTAATAGGGATGTTTGAGTTCGATCCGGCTTACAAACATCCAAGGAAGCACCGTGATTTTGTCTATAAAAAGGCCAAATTTCGCGAGGTTTTGAACATTTCATGTGACGAACTTCGCGACAAGATTCATCGGCTCTACCGTGCTCAATACATTCAGGATGCGTGTCTTCCCAGTTTGGGACTTTTCGAAGAAAATCTTCTCTCCACACTTAGTAGTCATGTATTTTTCTgc/gc
Amino_acid_changeTEGLRTFYSIVKNLFMLNRNTVIEMLLDDNNIKDVIGMFEFDPAYKHPRKHRDFVYKKAKFREVLNISCDELRDKIHRLYRAQYIQDACLPSLGLFEENLLSTLSSHVFFC/X
F41E6.4b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF41E6.4b.1:c.373_703del
HGVSpCE41240:p.Thr125AlafsTer6
cDNA_position471-801
CDS_position373-703
Protein_position125-235
Exon_number4/8
Codon_changeACAGAAGGACTACGAACTTTTTATTCAATCGTGAAGAACCTGTTCATGCTCAACCGAAACACTGTTATCGAAATGCTTCTCGACGATAATAATATCAAAGACGTAATAGGGATGTTTGAGTTCGATCCGGCTTACAAACATCCAAGGAAGCACCGTGATTTTGTCTATAAAAAGGCCAAATTTCGCGAGGTTTTGAACATTTCATGTGACGAACTTCGCGACAAGATTCATCGGCTCTACCGTGCTCAATACATTCAGGATGCGTGTCTTCCCAGTTTGGGACTTTTCGAAGAAAATCTTCTCTCCACACTTAGTAGTCATGTATTTTTCTgc/gc
Amino_acid_changeTEGLRTFYSIVKNLFMLNRNTVIEMLLDDNNIKDVIGMFEFDPAYKHPRKHRDFVYKKAKFREVLNISCDELRDKIHRLYRAQYIQDACLPSLGLFEENLLSTLSSHVFFC/X
F41E6.4a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF41E6.4a.1:c.1081_1411del
HGVSpCE41239:p.Thr361AlafsTer6
cDNA_position1083-1413
CDS_position1081-1411
Protein_position361-471
Exon_number7/12
Codon_changeACAGAAGGACTACGAACTTTTTATTCAATCGTGAAGAACCTGTTCATGCTCAACCGAAACACTGTTATCGAAATGCTTCTCGACGATAATAATATCAAAGACGTAATAGGGATGTTTGAGTTCGATCCGGCTTACAAACATCCAAGGAAGCACCGTGATTTTGTCTATAAAAAGGCCAAATTTCGCGAGGTTTTGAACATTTCATGTGACGAACTTCGCGACAAGATTCATCGGCTCTACCGTGCTCAATACATTCAGGATGCGTGTCTTCCCAGTTTGGGACTTTTCGAAGAAAATCTTCTCTCCACACTTAGTAGTCATGTATTTTTCTgc/gc
Amino_acid_changeTEGLRTFYSIVKNLFMLNRNTVIEMLLDDNNIKDVIGMFEFDPAYKHPRKHRDFVYKKAKFREVLNISCDELRDKIHRLYRAQYIQDACLPSLGLFEENLLSTLSSHVFFC/X
IsolationMutagenTMP/UV
GeneticsMapV
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan. Originally classified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan. Originally classified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark20112/20113-20443/20444 (331 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele