WormBase Tree Display for Variation: WBVar00252047

WBVar00252047 Name: Public_name: tm3343
    Other_name: T23B12.8a.1:c.-36-317_230del
      T23B12.8a.2:c.-37+195_230del
      T23B12.8b.1:c.42+195_308del
    HGVSg: CHROMOSOME_V:g.8470138_8470769del
  Sequence_details: SMap: S_parent: Sequence: T23B12
    Flanking_sequences: caatcagttccatgtggaaccattacaaac aaaggcacacacccatttttacctaataaa
    Mapping_target: T23B12
    Source_location: 7 CHROMOSOME_V 8470137 8470770 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3343_external
      tm3343_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3343
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00020722
    Transcript: T23B12.8a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T23B12.8a.2:c.-37+195_230del
        cDNA_position: ?-403
        CDS_position: ?-230
        Protein_position: ?-77
        Intron_number: 1-3/4
        Exon_number: 2-4/5
      T23B12.8b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T23B12.8b.1:c.42+195_308del
        cDNA_position: ?-335
        CDS_position: ?-308
        Protein_position: ?-103
        Intron_number: 2-3/3
        Exon_number: 3-4/4
      T23B12.8a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T23B12.8a.1:c.-36-317_230del
        cDNA_position: ?-393
        CDS_position: ?-230
        Protein_position: ?-77
        Intron_number: 1-3/4
        Exon_number: 2-4/5
      T23B12.8a.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-268
        CDS_position: ?-230
        Protein_position: ?-77
        Intron_number: 2/3
        Exon_number: 1-3/4
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 25574/25575-26206/26207 (632 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele