WormBase Tree Display for Variation: WBVar00252059

WBVar00252059 Name: Public_name: tm3364
    Other_name: M03F8.2e.1:c.-654+357_-10+87delinsTGAAATTTT
      M03F8.2b.1:c.202+357_846+87delinsTGAAATTTT
      M03F8.2a.1:c.157+357_801+87delinsTGAAATTTT
      M03F8.2d.1:c.157+357_801+87delinsTGAAATTTT
      M03F8.2c.1:c.202+357_846+87delinsTGAAATTTT
    HGVSg: CHROMOSOME_V:g.5945383_5946568delinsTGAAATTTT
  Sequence_details: SMap: S_parent: Sequence: M03F8
    Flanking_sequences: tttatggctaaatgtatcaattttcccttt ttgaaattttttgtgaaaaacaatttttgc
    Mapping_target: M03F8
    Source_location: 7 CHROMOSOME_V 5945382 5946569 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TGAAATTTT
      Deletion
    PCR_product: tm3364_external
      tm3364_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3364
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004206
    Transcript: M03F8.2e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M03F8.2e.1:c.-654+357_-10+87delinsTGAAATTTT
        Intron_number: 1-3/7
        Exon_number: 2-3/8
      M03F8.2d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M03F8.2d.1:c.157+357_801+87delinsTGAAATTTT
        Intron_number: 3-5/8
        Exon_number: 4-5/9
      M03F8.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M03F8.2c.1:c.202+357_846+87delinsTGAAATTTT
        Intron_number: 2-4/7
        Exon_number: 3-4/8
      M03F8.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M03F8.2a.1:c.157+357_801+87delinsTGAAATTTT
        Intron_number: 3-5/7
        Exon_number: 4-5/8
      M03F8.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: M03F8.2b.1:c.202+357_846+87delinsTGAAATTTT
        Intron_number: 3-5/7
        Exon_number: 4-5/8
    Interactor: WBInteraction000500894
      WBInteraction000500895
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype (19)
    Phenotype_not_observed: WBPhenotype:0000047 Paper_evidence: WBPaper00036358
        Curator_confirmed: WBPerson712
        Remark: No abnormalities were observed for Ea and Ep cell ingression. Paper_evidence: WBPaper00036358
            Curator_confirmed: WBPerson712
      WBPhenotype:0000748 Paper_evidence: WBPaper00036358
        Curator_confirmed: WBPerson712
        Remark: No abnormalities in this phenotype were observed in these mutants. Paper_evidence: WBPaper00036358
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0004015 PATO:0000460 Paper_evidence: WBPaper00036358
                Curator_confirmed: WBPerson712
            WBbt:0006770 PATO:0000460 Paper_evidence: WBPaper00036358
                Curator_confirmed: WBPerson712
      WBPhenotype:0001018 Paper_evidence: WBPaper00036358
        Curator_confirmed: WBPerson712
        Remark: No abnormalities in this phenotype were observed in these mutants. Paper_evidence: WBPaper00036358
            Curator_confirmed: WBPerson712
  Reference: WBPaper00036358
  Remark: 14054/14055-TGAAATTTT-15240/15241 (1186 bp deletion + 9 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele